2012 »ý¹°Á¤º¸ÇÐ(NC30100) ¼ö¾÷ ȨÆäÀÌÁö

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16. NGS report

NGS Ư°­ ¶§¹®¿¡ report°¡ Çϳª ´õ ´Ã¾î³ª¼­ ¹Ì¾ÈÇÏ°Ô »ý°¢ÇÔ. ;-)

±×·¡µµ Áß¿äÇÑ »õ·Î¿î Á¤º¸µéÀ» ´Ù·ç´Â °ÍÀ̹ǷΠ¹Ýµå½Ã Áý¿¡¼­ ´Ù½Ã ÇØ¼­ ¼º°øÇØ º¸°í È®ÀÎ ¸®Æ÷Æ®¸¦ Á¦ÃâÇϽÿÀ. ¾Æ·¡ ¸µÅ©¸¦ ÂüÁ¶ÇÒ °Í.

  REPORT³»¿ë   <-- ¾÷µ¥ÀÌÆ® µÇ¾úÀ½

±×¸®°í ¸¶Áö¸· ¼ö¾÷Àº Linux¶ó´Â ¼­¹ö ¿î¿µÃ¼Á¦¸¦ °æÇèÇÑ °ÍÀÌ´Ï Linux ¸í·É¾î¿¡ ´ëÇÑ ÀÏ¹Ý »çÇ×À» ¾Æ·¡ ¸µÅ©ÇØ ³õ¾ÒÀ¸´Ï Âü°í ÇϽÿÀ.

  linux ±âº» ¸í·É¾îµé 

 

17. ¹æÇÐ Áß ÀÎÅÏ¿¬±¸¿ø ¸ðÁý

±³°ú½Ã°£¿¡ ¿©·¯¹ø ¾ð±ÞÇÑ ´ë·Î ½Ä¹°ºÐÀÚ°èÅëÇבּ¸½Ç¿¡¼­´Â ¸¹Àº projectµéÀÌ »õ·Î ½ÃÀ۵ǰí ÀÖ½À´Ï´Ù. ÀÌ¿¡ °ü½ÉÀÖ´Â ÇлýµéÀ» ¸ðÁýÇÏ´Ï Âü°í¹Ù¶ø´Ï´Ù.  ¿©·¯ °¡Áö°¡ Àִµ¥, ÇÑ °¡Áö´Â ±³³»¿¬±¸·Î ÁøÇàµÇ´Â "±âÈĺ¯È­´ëºñ »ý¹°¿¬±¸¿¡ À־ÀÇ IT mobile deviceÀÇ È°¿ë ¿¬±¸"¿¡ °ø½ÄÀûÀ¸·Î Âü¿©ÇÒ ÇлýÀ» ¸ðÁýÇÕ´Ï´Ù. º» ½Ä¹°ºÐ·ùÇÐ ¹× ½Ä¹°ºÐ·ùÇнÇÇèÀ» ¿­½ÉÈ÷ ¼ö°­ÇÑ Çлýµé Áß¿¡ °ü½ÉÀÖ´Â ÇлýÀÌ ÀÖ¾úÀ¸¸é ÇÕ´Ï´Ù. ÇÒ ÀϵéÀº 1) ÇîµåÆùÀ¸·Î ÃÔ¿µÇÑ ÀÙ À̹ÌÁö¿¡ ÀÇÇÑ ½Ä¹°ÀÇ ÀÚµ¿ µ¿Á¤ ½Ã½ºÅÛ °³¹ß°ú 2) Çѱ¹½Ä¹°¿¡ ´ëÇÑ interactive key¸¦ ÀÛ¼ºÇϰí, °ü·Ã ¾îÇÃÀ» ¸¸µå´Â ÀÛ¾÷À¸·Î À̸¦À§ÇÑ ±âÃʵ¥ÀÌŸ¸¦ Á¤¸®Çϰí, ÇÁ·Î±×·¡¹Ö¿¡ Âü¿©ÇÏ´Â °ÍÀ¸·Î »ý¹°¿¬±¸¿Í ÄÄÇ»ÅÍ µ¥ÀÌÅͺ£À̽º¿¡ °ü½ÉÀÌ ÀÖ´Â ÇлýÀÌ¸é ´õ¿í ÁÁ½À´Ï´Ù. °ø½ÄÀûÀÎ Âü¿© ¿¬±¸¿øÀ¸·Î¼­ ¹æÇÐ Áß ½ÇÇè½Ç »ýȰÀ» Çϸ鼭 ¿¬±¸¿¡ Âü¿©Çϰí, ¼ÒÁ¤ÀÇ ÀΰǺñ°¡ Áö±ÞµÇ¸ç, ÇâÈÄ »ý¸í°úÇבּ¸°úÁ¦ ¼ö°­°ú¸ñÀ¸·Î ÀüȯÇÏ¿© ÇÐÁ¡Ãëµæµµ °¡´ÉÇÕ´Ï´Ù. ¸¹Àº °ü½ÉÀ» ¹Ù¶ø´Ï´Ù.

 

º¸¶÷µÈ ¹æÇÐÀ» º¸³À½Ã´Ù.!!!

 

¾Æ... ÇѰ¡Áö ´õ... Ä¿¸®Å§·³ »óÀ¸·Î´Â 2Çгâ 2Çб⠰ú¸ñÀ¸·Î ºÐÀÚ°èÅëÇÐ (¿µ¾î) ¼ö¾÷ÀÌ ÀÖ°í, À̰ÍÀ» ±âÃÊ·Î »ý¹°Á¤º¸ÇÐÀ» µè°Ô ÇÏ´Â °ÍÀÌ ³ªÀÇ Àǵµ¿´´Âµ¥, ºÐÀÚ°èÅëÇÐÀ» µè°í »ý¹°Á¤º¸ÇÐÀ» µéÀº »ç¶÷ÀÌ ¸Å¿ì Àû¾úÀ¸´Ï À̹øÇб⠻ý¹°Á¤º¸ÇÐÀ» µéÀº »ç¶÷µé Áß ¸¹Àº »ç¶÷ÀÌ ºÐÀÚ°èÅëÇÐÀ» ¼ö°­ÇÏ±æ ¹Ù¶ø´Ï´Ù. ¿µ¾î¼ö¾÷À̶ó ºÎ´ãÀº ÀÖ°ÚÁö¸¸ »ý¹°Á¤º¸ÇÐÀ» ÀÌ¹Ì µé¾úÀ¸´Ï ´õ ¼ö¿ùÇÒ ¼ö ÀÖÀ» °ÍÀ̰í, ½ÇÁ¦ ½ÇÇè°ú º´ÇàÇÏ´Â ¼ö¾÷ÀÌ´Ï ºÐ·ù-»ýÅÂ-À¯Àü-ºÐÀÚ»ý¹°-À¯Àüü-»ý¹°Á¤º¸ µîÀÇ ºÐ¾ß·Î °øºÎ¸¦ °è¼ÓÇϰųª »¸¾î³ª°¡°íÀÚ ÇÏ´Â »ç¶÷Àº ²À µè±â ¹Ù¶ø´Ï´Ù.

 

18. ¸®Æ÷Æ® ¹ÌÁ¦Ãâ

Áö±Ý±îÁöÀÇ 5°³ ¸®Æ÷Æ®ÀÇ ¹ÌÁ¦Ãâ »óȲ ÀÔ´Ï´Ù.    

 

¡¡ Sequencher Seqin DNA secret of LifeÁß°£¸®Æ÷Æ®
20091146  X    
20092467  X    
20101110      X

 

Ȥ½Ã³ª Âø¿À°¡ ÀÖÀ» ¼öµµ ÀÖÀ¸´Ï ¹Ýµå½Ã È®ÀÎÇϱ⠹ٶø´Ï´Ù.

 

 º¸Á¤ÇÏÁö ¾ÊÀº ¼ºÀûºÐÆ÷ÀÔ´Ï´Ù.

A+´Â Á¤À±ÁÖ, ±è¹ÌÁ¤, ¹æ¹ÎÇý, ¹Ú¼öÇö, À±Á¤¹Î ÇлýÀÔ´Ï´Ù.

 

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Original ¼ö¾÷°èȹ¼­

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1ÁÖÂ÷ 3¿ù 7ÀÏ: °­ÀÇ °èȹ ¼Ò°³, »ý¹°Á¤º¸Çп¡ ´ëÇÑ ¼Ò°³

         Intro

2ÁÖÂ÷ 3¿ù 14ÀÏ: À¯Àü¹°Áú, À¯ÀüÀÚ/´Ü¹éÁúÀÇ ±¸Á¶ µî »ý¹°Á¤º¸ÇÐÀÇ ºÐÀÚ»ý¹°ÇÐÀû ±âÃÊ. ±³Àç 1Àå

       Chap1-Basics-part-I-PPT     Animation

      (PPT ÆÄÀÏÀÇ ¸µÅ©¸¦ ¸ðµÎ ÀÛµ¿½ÃŰ·Á¸é animation È­ÀÏÀ» ¹Þ¾Æ ¾ÐÃà Ç®¾î "Anomation" folder¸¦ PPT ÆÄÀϰú °°Àº folder¿¡ ³Ö¾î¾ß ÇÔ.

       Paper1-alternative splicing  

3ÁÖÂ÷ 3¿ù 21ÀÏ: DNA ¿°±â¼­¿­ °áÁ¤ (½Ç½À) primer design

        Chap1-Basics-part-2-PPT   Chap1-Basics-part-2-PDF    OLIGO »ç¿ë¹ý  OLIGO PROGRAM  

        Molecular Phylogeny Workshop

        1st assiggnment  

4ÁÖÂ÷ 3¿ù 28ÀÏ: (½Ç½À) Sequencher¸¦ ÀÌ¿ëÇÑ ¼­¿­ ºÐ¼®ÀÚ·á editing

         Paper2-454pyrosequencing  PAG meeting ÈÄ±â  Sanger animation   454 animation   Illumina animation

         ½ÃÄöÃÄ »ç¿ë¹ý    ½ÃÄöÃÄProgram(DEMO)   ½ÃÄöÃÄ DATA    

5ÁÖÂ÷ 4¿ù 4ÀÏ: SeqinÀ» ÀÌ¿ëÇÑ sequence submission

         BIOINFORMATICS-NCBI-GENERAL-PPT  SEQIN PROGRAM  SEQIN»ç¿ë¹ý  SEQIN DATA

6ÁÖÂ÷ 4¿ù 11ÀÏ:  ±¹È¸ÀÇ¿ø¼±°ÅÀÏ

 

7ÁÖÂ÷ 4¿ù 18ÀÏ: Data Search and Pairwise Alignment. ±³Àç 2Àå  

               Chap2-1 PPT      Paper3-GenomeDuplication paper    

 

8ÁÖÂ÷ 4¿ù 25ÀÏ: (½Ç½À) CLUSTALXÀ» ÀÌ¿ëÇÑ sequence alignment

             Chap2-2 PPT   CLUSTALX   Paper4-Ancestral Polyploidy paper -Nature

 

9ÁÖÂ÷ 5¿ù 2ÀÏ: Áß°£°í»ç  2011 Áß°£°í»ç ¹®Á¦   2012 Áß°£°í»ç ¹®Á¦

      Æ¯º°¼¼¹Ì³ª: °Ô³ð¿¬±¸Àç´Ü ¹ÚÁ¾È­ ¹Ú»ç´Ô

             ¼¼¹Ì³ª PPT File            ¼¼¹Ì³ª À½¼º³ìÀ½(Windows ¹Ìµð¾îÇ÷¹À̾î·Î Àç»ý)

10ÁÖÂ÷ 5¿ù 9ÀÏ:  Substitution Pattern. ±³Àç 3Àå

             Chap3-PPT  

11ÁÖÂ÷ 5¿ù 16ÀÏ: Distance-Based Methods of Phylogenetics. ±³Àç 4Àå

                           Character-Based Methods of Phylogenetics. ±³Àç 5Àå     

            Chap4, 5-PPT

 

12ÁÖÂ÷ 5¿ù 23ÀÏ:  (½Ç½À) MEGA, PHYLIP program¿¡ ÀÇÇÑ Phylogeny reconstruction.

       MEGAprogram    

       Paper5-±è»óÅÂ-Basal-most angiosperm review paper       Paper6-Kim et al 2001 Magnoliaceae paper  

       Phenetics vs. Phylogenetics-Rordford   Example DATA (Caex psbK~psbI)

       FINAL REPORT       Interleaved form À̶õ?

 

13ÁÖÂ÷ 5¿ù 30ÀÏ: »ý¹°Á¤º¸ ±â¾÷¹æ¹®

 

6¿ù 6ÀÏ ÇöÃæÀÏ

 

14ÁÖÂ÷ 6¿ù 9ÀÏ(Åä) º¸°­:  

(½Ç½À) De novo assembly process based on sequences generated by the next generation sequencing (NGS) technology

   ÀÌ·Ð PPT       Assembly°úÁ¤ ¸Þ´º¾ó    REPORT³»¿ë

       Reference sequence: ¸ñ·ÃÀÇ »çÃÌÀÎ Liriodendron cpDNA Àüü¼­¿­¿¡¼­ IR ÇÑÄ«ÇǸ¦ »« ¼­¿­        linux ±âº» ¸í·É¾îµé  

 

 

15ÁÖÂ÷ 6¿ù 13ÀÏ: ±â¸»°í»ç    2011-±â¸»°í»ç¹®Á¦

 

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DNA »ý¸íÀÇ ºñ¹Ð (¸®Æ÷Æ®´Â 3Æí)   3¿ù 14ÀÏ ~ 3¿ù 16ÀÏ ±îÁö¸¸ OPEN

Phylogeny Programs: Washington Univ.